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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
9
accessible chromatin
5
histone modifications
5
target gene predictions
4
candidate regulatory elements
3
chromatin state
2
binding sites
2
variant allelic effects
Annotation Category
5
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
in vitro differentiated cells
Biosample term
10
liver
4
hepatocyte
3
HepG2
1
HuH-7
1
HuH-7.5
1
hepatic stellate cell
1
right lobe of liver
Disease term
1
hepatocellular carcinoma
Organ
5
liver
4
epithelium
Life stage
1
adult
1
embryonic
1
unknown
Date released
3
September, 2022
1
May, 2021
1
November, 2021
Software used
3
r
2
abc
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
Showing 5 of 5 results
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Download
FileSet
DSR628THR
released
Annotation file set
: Target gene predictions for BSS00718 HuH-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP