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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
24
accessible chromatin
24
gene expression
23
candidate regulatory elements
21
target gene predictions
14
histone modifications
13
binding sites
8
eQTL
4
differential activity
4
variant allelic effects
3
Fine-mapped variants
3
chromatin state
1
caQTL
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
bed bed9
2
bed bed3+
1
bam
1
bigBed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
Biosample term
2
liver
1
HepG2
Organ
7
connective tissue
6
brain
5
heart
4
intestine
4
pancreas
3
epithelium
3
large intestine
3
liver
3
musculature of body
2
adipose tissue
2
blood
2
bodily fluid
1
blood vessel
1
bone element
1
bone marrow
1
embryo
1
lung
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
vasculature
1
vein
Date released
3
August, 2017
Software used
3
chromhmm
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
files.file_type!
bed bed9
Showing 3 of 3 results
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Download
FileSet
TSTSR027410
released
Annotation file set
: ChromHMM 13-state model for Liver
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR241972
released
Annotation file set
: ChromHMM 18-state model for Liver
Lab:
AMP-T2D consortium
Project:
AMP