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Citing CMDGA
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Annotation type
24
gene expression
17
accessible chromatin
14
chromatin state
14
histone modifications
13
binding sites
8
eQTL
4
differential activity
4
target gene predictions
3
Fine-mapped variants
2
variant allelic effects
1
caQTL
Annotation Category
4
Target gene links
Annotation type Category
DNase-seq
14
ChIP-seq
4
ATAC-seq
3
H3K27ac ChIP-Seq
2
pCHi-C
1
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
2
tissue
1
cell line
1
primary cell
Biosample term
2
liver
1
HepG2
1
hepatocyte
Organ
64
epithelium
52
embryo
52
uterus
28
blood
28
bodily fluid
25
connective tissue
24
pancreas
12
intestine
10
heart
6
large intestine
6
musculature of body
5
adrenal gland
5
brain
5
skin of body
5
stomach
4
liver
4
lung
4
vasculature
3
blood vessel
3
esophagus
3
mammary gland
3
small intestine
2
adipose tissue
2
bone element
2
bone marrow
2
gonad
2
ovary
2
thymus
1
bronchus
1
lymphatic vessel
1
lymphoid tissue
1
spleen
1
thyroid gland
1
urinary bladder
1
vein
Life stage
1
adult
Date released
3
March, 2020
1
November, 2021
Software used
1
abc
1
chicago
1
hiccups
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
month_released!
August, 2017
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR940SFE
released
Annotation file set
: A target gene prediction annotation in liver of DSR477FKL Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR605JRF
released
Annotation file set
: A target gene prediction annotation in Human Liver of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP