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Schema
Citing CMDGA
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Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
4
Target gene links
Annotation type Category
3
DNase-seq
2
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
23
K562
10
liver
8
GM12878
4
hepatocyte
3
HepG2
2
GM19238
2
GM19239
2
GM19240
2
HAP-1
2
NAMALWA cell
2
OCI-LY7
1
CMK
1
DOHH2
1
GM06990
1
GM12875
1
GM12891
1
GM12892
1
GM18505
1
GM19099
1
GM19193
1
HL-60
1
HuH-7
1
HuH-7.5
1
KBM-7
1
NB4
1
RPMI8226
1
SU-DHL-6
1
right lobe of liver
Organ
4
epithelium
4
liver
0
bodily fluid
Life stage
1
embryonic
1
unknown
Date released
2
September, 2022
1
May, 2021
1
November, 2021
Software used
2
abc
2
r
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
organ_slims!
connective tissue
Showing 4 of 4 results
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Download
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP