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Citing CMDGA
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Annotation type
5
accessible chromatin
3
target gene predictions
1
candidate regulatory elements
1
chromatin state
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
4
type II pneumocyte
3
type I pneumocyte
1
A549
1
IMR-90
1
NCI-H226 cell
1
PC-9
1
endothelial cell of artery
1
lung neuroendocrine cell
1
right lung
1
upper lobe of left lung
Organ
5
lung
4
epithelium
Date released
3
November, 2021
1
April, 2020
1
June, 2020
Software used
4
macs
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
3
ENCODE
1
AMP
1
LungMap
RFA
3
ENCODE3
1
AMP
1
LungMap2
Showing 5 of 5 results
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FileSet
DSR731YZV
released
Annotation file set
: ATAC-seq peaks in AT2 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR314DTK
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR413LRE
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR002AWQ
released
Annotation file set
: Accessible chromatin annotation of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR739JRN
released
Annotation file set
: Accessible chromatin annotation for Lung NCI-H226 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP