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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
20
lung
13
left lung
12
right lung
8
A549
7
fibroblast of lung
7
type II pneumocyte
7
upper lobe of left lung
6
IMR-90
5
PC-9
4
WI38
4
type I pneumocyte
2
lung microvascular endothelial cell
1
NCI-H226
1
NCI-H226 cell
1
NCI-H460
1
NCI-H460 cell
1
endothelial cell of artery
1
lung neuroendocrine cell
Organ
5
lung
Life stage
1
unknown
Date released
3
February, 2021
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
Showing 5 of 5 results
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FileSet
DSR671RAV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE PC-9
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026WMS
released
Annotation file set
: Histone modifications annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR997DEX
released
Annotation file set
: Binding sites annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR109GCX
released
Annotation file set
: Accessible chromatin annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP