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Schema
Citing CMDGA
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Annotation type
22
candidate regulatory elements
12
target gene predictions
11
chromatin state
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
4
type II pneumocyte
3
type I pneumocyte
1
A549
1
IMR-90
1
NCI-H226 cell
1
PC-9
1
endothelial cell of artery
1
fibroblast of villous mesenchyme
1
lung neuroendocrine cell
1
placenta
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
right lung
1
upper lobe of left lung
Organ
4
lung
3
epithelium
0
placenta
Date released
2
November, 2021
1
April, 2020
1
June, 2020
Software used
3
macs
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
2
ENCODE
1
AMP
1
LungMap
RFA
2
ENCODE3
1
AMP
1
LungMap2
Showing 4 of 4 results
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR767ZHU
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR436AKV
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR661XEV
released
Annotation file set
: Accessible chromatin annotation for Lung Fetal lung from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP