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Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
6
target gene predictions
5
candidate regulatory elements
3
chromatin state
3
differential activity
2
gene expression
1
binding sites
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
6
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
HiC
1
pCHi-C
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
tissue
1
primary cell
Biosample term
6
MCF-7
5
body of pancreas
5
pancreas
4
endocrine pancreas
4
mammary gland epithelial cell
4
pancreatic delta cell
3
luminal epithelial cell of mammary gland
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
Panc1
2
T47D
2
myoepithelial cell of mammary gland
1
8988T
1
EndoC_BH1
1
HPDE6-E6E7
1
fibroblast of mammary gland
1
islet of Langerhans
1
mammary epithelial cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
Organ
6
pancreas
1
connective tissue
0
mammary gland
Life stage
3
adult
Date released
2
March, 2020
2
September, 2022
1
January, 2021
1
May, 2021
Software used
2
r
1
abc
1
cicero
1
hiccups
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
5
AMP
1
T1D
RFA
5
AMP
1
T1D
Showing 6 of 6 results
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Download
FileSet
DSR310PTQ
released
Annotation file set
: Target gene predictions for BSS01407 pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR352GMB
released
Annotation file set
: Target gene predictions for BSS01406 pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR213AOJ
released
Annotation file set
: enhancer-gene predicton of pancreas-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR457TFN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR462PPV
released
Annotation file set
: A target gene prediction annotation in pancreas of DSR905BNL Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR304SKW
released
Annotation file set
: A target gene prediction annotation in Human Pancreas of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP