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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
6
accessible chromatin
5
candidate regulatory elements
3
chromatin state
1
binding sites
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
8
Target gene links
Annotation type Category
4
ATAC-seq
4
DNase-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
1
HiC
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
5
tissue
3
primary cell
Biosample term
6
MCF-7
5
body of pancreas
5
pancreas
4
endocrine pancreas
4
mammary gland epithelial cell
4
pancreatic delta cell
3
luminal epithelial cell of mammary gland
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
Panc1
2
T47D
2
myoepithelial cell of mammary gland
1
8988T
1
EndoC_BH1
1
HPDE6-E6E7
1
fibroblast of mammary gland
1
islet of Langerhans
1
mammary epithelial cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
Organ
8
pancreas
3
epithelium
0
mammary gland
Life stage
3
adult
Date released
2
March, 2020
2
May, 2021
2
November, 2021
2
September, 2022
Software used
4
abc
2
r
1
hiccups
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
Project
6
AMP
2
ENCODE
RFA
6
AMP
2
ENCODE3
Showing 8 of 8 results
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Download
FileSet
DSR310PTQ
released
Annotation file set
: Target gene predictions for BSS01407 pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR352GMB
released
Annotation file set
: Target gene predictions for BSS01406 pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855IQO
released
Annotation file set
: Target gene predictions of Pancreatic Beta Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR451TRZ
released
Annotation file set
: Target gene predictions of Pancreatic Beta Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR633DNL
released
Annotation file set
: enhancer-gene predicton of pancreatic-beta-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR213AOJ
released
Annotation file set
: enhancer-gene predicton of pancreas-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR462PPV
released
Annotation file set
: A target gene prediction annotation in pancreas of DSR905BNL Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR304SKW
released
Annotation file set
: A target gene prediction annotation in Human Pancreas of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP