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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
gene expression
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
7
snATAC-seq
Available data
7
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
51
muscle of arm
43
muscle of leg
41
muscle of back
16
psoas muscle
14
gastrocnemius medialis
13
muscle of trunk
12
skeletal muscle tissue
9
esophagus muscularis mucosa
9
skeletal muscle satellite cell
7
skeletal muscle fiber
6
LHCN-M2
6
gastroesophageal sphincter
6
stomach smooth muscle
6
type I muscle cell
6
type II muscle cell
5
myotube
5
skeletal muscle cell
4
A673
4
SJCRH30
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
hindlimb muscle
1
rectal smooth muscle tissue
1
skeletal muscle
1
smooth muscle tissue
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deltasvm
Lab
5
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
4
AMP
3
ENCODE
RFA
3
ENCODE3
2
AMP
2
AMP2
annotation_type!
gene expression
chromatin state
Showing 7 of 7 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP