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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
candidate regulatory elements
3
target gene predictions
2
binding sites
2
chromatin state
2
gene expression
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
ATAC-seq
2
DNase-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
16
muscle of arm
14
muscle of leg
13
muscle of back
8
psoas muscle
5
gastrocnemius medialis
5
muscle of trunk
3
myotube
3
skeletal muscle tissue
2
A673
2
LHCN-M2
2
esophagus muscularis mucosa
2
skeletal muscle satellite cell
2
stomach smooth muscle
1
SJCRH30
1
aortic smooth muscle cell
1
cardiac muscle myoblast
1
gastroesophageal sphincter
1
rectum smooth muscle tissue
1
respiratory system smooth muscle
1
skeletal muscle cell
1
somatic muscle myotube
1
type I muscle cell
1
type II muscle cell
Organ
5
musculature of body
Life stage
1
adult
Date released
1
February, 2021
1
May, 2021
1
November, 2021
1
October, 2022
1
September, 2022
Software used
2
abc
1
chromhmm
1
macs
1
r
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
Showing 5 of 5 results
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FileSet
DSR198EWK
released
Annotation file set
: Binding sites annotation for myotube (HSMMtube) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR326ORZ
released
Annotation file set
: Target gene predictions for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920UVL
released
Annotation file set
: Target gene predictions of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR122YGR
released
Annotation file set
: Binding sites annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP