Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
66
muscle of arm
56
muscle of leg
54
muscle of back
19
psoas muscle
17
gastrocnemius medialis
17
muscle of trunk
15
skeletal muscle tissue
10
esophagus muscularis mucosa
9
stomach smooth muscle
8
skeletal muscle satellite cell
7
gastroesophageal sphincter
5
A673
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
skeletal muscle cell
4
LHCN-M2
4
SJCRH30
4
rectum smooth muscle tissue
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
myotube
2
muscle of leg
2
skeletal muscle
1
hindlimb muscle
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
Organ
3
musculature of body
Life stage
1
unknown
Date released
1
February, 2021
1
May, 2021
1
October, 2022
Software used
macs
1
abc
1
chromhmm
1
encode-ccres
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
software_used.software.name!
macs
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR198EWK
released
Annotation file set
: Binding sites annotation for myotube (HSMMtube) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR706TCC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myotube
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP