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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
1
bed bed9
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
66
muscle of arm
57
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
11
esophagus muscularis mucosa
9
skeletal muscle satellite cell
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
6
skeletal muscle fiber
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
skeletal muscle cell
5
type I muscle cell
5
type II muscle cell
4
rectum smooth muscle tissue
2
muscle of leg
2
cardiac muscle myoblast
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
5
musculature of body
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
May, 2020
Software used
2
r
1
chromhmm
1
deltasvm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bigWig
Showing 5 of 5 results
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Download
FileSet
DSR404VRF
released
Annotation file set
: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722IWA
released
Annotation file set
: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR253DCD
released
Annotation file set
: Chromatin states for BSS01572 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR101OOW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR592EHG
released
Annotation file set
: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP