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Citing CMDGA
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Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
11
skeletal muscle satellite cell
7
skeletal muscle fiber
6
skeletal muscle cell
6
type I muscle cell
6
type II muscle cell
3
myotube
2
cardiac muscle myoblast
2
somatic muscle myotube
1
aortic smooth muscle cell
Organ
6
musculature of body
Life stage
1
unknown
Date released
2
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
eigenmt
1
qTLtools
1
rasqual
Lab
3
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
4
AMP
2
ENCODE
RFA
3
AMP2
2
ENCODE3
1
AMP
annotation_type!
gene expression
Showing 6 of 6 results
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FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP