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Annotation type
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
1
ATAC-seq
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
66
muscle of arm
56
muscle of leg
54
muscle of back
19
psoas muscle
17
gastrocnemius medialis
17
muscle of trunk
15
skeletal muscle tissue
10
esophagus muscularis mucosa
9
stomach smooth muscle
8
skeletal muscle satellite cell
7
gastroesophageal sphincter
5
A673
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
skeletal muscle cell
4
LHCN-M2
4
SJCRH30
4
rectum smooth muscle tissue
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
myotube
2
muscle of leg
2
skeletal muscle
1
hindlimb muscle
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
Organ
4
musculature of body
Date released
2
February, 2024
1
November, 2021
1
October, 2022
Software used
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
3
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP2
1
ENCODE3
software_used.software.name!
macs
Showing 4 of 4 results
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Download
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP