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Annotation type
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
1
ATAC-seq
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
17
muscle of arm
14
muscle of leg
13
muscle of back
8
psoas muscle
6
skeletal muscle tissue
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
muscle of trunk
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
type I muscle cell
4
type II muscle cell
3
esophagus muscularis mucosa
2
muscle of leg
2
A673
2
skeletal muscle cell
2
stomach smooth muscle
1
hindlimb muscle
1
LHCN-M2
1
SJCRH30
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
gastroesophageal sphincter
1
myotube
1
rectum smooth muscle tissue
1
skeletal muscle
Organ
4
musculature of body
Date released
2
February, 2024
1
November, 2021
1
October, 2022
Software used
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
3
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP2
1
ENCODE3
annotation_category!
cis-regulatory elements
Showing 4 of 4 results
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Download
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP