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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
11
esophagus muscularis mucosa
9
skeletal muscle satellite cell
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
6
skeletal muscle cell
6
skeletal muscle fiber
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
type I muscle cell
5
type II muscle cell
4
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
6
musculature of body
1
blood vessel
1
vasculature
Life stage
1
unknown
Date released
3
February, 2024
November, 2021
1
February, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
RFA
4
AMP2
2
AMP
month_released!
November, 2021
Showing 6 of 6 results
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FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR152SRX
released
Annotation file set
: Binding sites annotation for Cardiovascular Aortic_smooth_muscle_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP