Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
67
muscle of arm
57
muscle of leg
54
muscle of back
19
psoas muscle
17
gastrocnemius medialis
16
muscle of trunk
16
skeletal muscle tissue
11
esophagus muscularis mucosa
8
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
7
skeletal muscle satellite cell
6
skeletal muscle cell
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
4
A673
4
myotube
3
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
skeletal muscle
1
smooth muscle tissue
1
type I muscle cell
1
type II muscle cell
Organ
4
musculature of body
3
intestine
3
large intestine
Life stage
3
adult
1
unknown
Date released
3
September, 2022
1
May, 2022
Software used
2
r
1
chromhmm
1
macs
Lab
5
Stephen Parker, UMich
4
AMP-T2D consortium
2
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR810KDL
released
Annotation file set
: Candidate regulatory elements for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR055KZV
released
Annotation file set
: Target gene predictions for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP