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Schema
Citing CMDGA
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Annotation type
1
chromatin state
1
differential activity
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
RNA-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
11
esophagus muscularis mucosa
9
stomach smooth muscle
7
gastroesophageal sphincter
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
4
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Disease term
1
coronary artery disease
Organ
2
musculature of body
Life stage
1
adult
Date released
1
August, 2017
1
February, 2024
Software used
1
chromhmm
1
deseq2
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR712UEE
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for skeletal muscle (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR344424
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP