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Schema
Citing CMDGA
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Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
2
Genetic variant effects
Annotation type Category
5
snATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
50
muscle of arm
44
muscle of leg
41
muscle of back
13
gastrocnemius medialis
12
muscle of trunk
12
psoas muscle
10
skeletal muscle tissue
9
skeletal muscle satellite cell
8
esophagus muscularis mucosa
7
stomach smooth muscle
6
LHCN-M2
6
gastroesophageal sphincter
5
skeletal muscle fiber
4
SJCRH30
4
myotube
4
skeletal muscle cell
3
A673
3
rectum smooth muscle tissue
3
type I muscle cell
3
type II muscle cell
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
hindlimb muscle
1
rectal smooth muscle tissue
1
skeletal muscle
1
smooth muscle tissue
Organ
5
musculature of body
Date released
3
November, 2021
2
February, 2024
Software used
5
macs
Lab
3
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
3
ENCODE
2
AMP
RFA
3
ENCODE3
2
AMP2
month_released!
February, 2020
Showing 5 of 5 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP