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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
32
adipose tissue
32
fibroblast
27
adipocyte
22
pericyte cell
21
subcutaneous adipose tissue
20
psoas muscle
19
foreskin fibroblast
19
mesenchymal stem cell
18
gastrocnemius medialis
18
omental fat pad
17
fibroblast of cardiac tissue
17
muscle of trunk
17
osteoblast
16
fibroblast of lung
16
skeletal muscle tissue
13
skeletal muscle satellite cell
12
fibroblast of dermis
12
skin fibroblast
11
esophagus muscularis mucosa
11
hepatic stellate cell
10
pancreatic stellate cell
9
skeletal muscle fiber
9
stomach smooth muscle
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
7
GM23248
7
LHCN-M2
7
chondrocyte
7
gastroesophageal sphincter
7
mesangial cell
7
type I muscle cell
7
type II muscle cell
6
skeletal muscle cell
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
SJCRH30
5
cardiac fibroblast
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
4
HT1080
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
fibroblast of gingiva
4
preadipocyte
4
rectum smooth muscle tissue
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
hindlimb muscle
2
muscle of leg
2
adipose tissue derived mesenchymal stem cell
2
cardiac muscle myoblast
2
columnar chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
forelimb muscle
2
luteal cell
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
aortic smooth muscle cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
hindlimb muscle
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
1
rectal smooth muscle tissue
1
smooth muscle tissue
1
white adipose cell
1
white adipose tissue
Disease term
3
Ewing sarcoma
Organ
5
musculature of body
0
connective tissue
Life stage
3
child
1
young adult
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR538XCP
released
Annotation file set
: Candidate regulatory elements for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887BDZ
released
Annotation file set
: Target gene predictions for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR705BMV
released
Annotation file set
: Chromatin states for BSS00035 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR958EYW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A673
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR293FCZ
released
Annotation file set
: enhancer-gene predicton of A673-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP