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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
26
MCF-7
22
foreskin keratinocyte
21
keratinocyte
20
psoas muscle
19
foreskin fibroblast
18
gastrocnemius medialis
17
muscle of trunk
16
mammary gland epithelial cell
16
skeletal muscle tissue
13
skeletal muscle satellite cell
12
fibroblast of dermis
12
skin fibroblast
11
esophagus muscularis mucosa
10
dermis blood vessel endothelial cell
10
lower leg skin
10
mammary epithelial cell
9
skeletal muscle fiber
9
stomach smooth muscle
8
dermis lymphatic vessel endothelial cell
8
fibroblast of mammary gland
8
myoepithelial cell of mammary gland
7
GM23248
7
LHCN-M2
7
T47D
7
gastroesophageal sphincter
7
luminal epithelial cell of mammary gland
7
type I muscle cell
7
type II muscle cell
6
iPS DF 4.7 Cell Line
6
skeletal muscle cell
6
skin of body
5
A673
5
RPMI7951
5
SJCRH30
5
SK-MEL-5
5
gastrocnemius medialis(Muscle - Skeletal)
5
iPS DF 19.11
5
left ventricle myocardium
5
myotube
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
rectum smooth muscle tissue
3
COLO829
3
MCF 10A
3
epidermal melanocyte
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
basal cell of epidermis
2
cardiac muscle myoblast
2
forelimb muscle
2
granular cell of epidermis
2
mammary gland
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
somatic muscle myotube
1
BJ
1
HGPS cell
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
hindlimb muscle
1
iPS DF 4.7
1
rectal smooth muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
smooth muscle tissue
Disease term
3
Ewing sarcoma
Organ
5
musculature of body
0
mammary gland
0
skin of body
Life stage
3
child
1
young adult
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR538XCP
released
Annotation file set
: Candidate regulatory elements for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887BDZ
released
Annotation file set
: Target gene predictions for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR705BMV
released
Annotation file set
: Chromatin states for BSS00035 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR958EYW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A673
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR293FCZ
released
Annotation file set
: enhancer-gene predicton of A673-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP