Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
40
brain
15
caudate nucleus
13
substantia nigra
12
putamen
10
cerebellum
10
frontal cortex
10
layer of hippocampus
10
pituitary stalk
9
Ammon's horn
9
temporal lobe
8
choroid plexus epithelial cell
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
amygdala
6
angular gyrus
6
globus pallidus
6
hypothalamus
6
midbrain
6
nucleus accumbens
5
cardiac fibroblast
5
BE(2)-C
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
cingulate gyrus
4
Daoy
4
U-87 MG
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
medulla oblongata
4
middle frontal gyrus
4
pons
3
A172
3
M059J
3
brain microvascular endothelial cell
3
cerebellar cortex
3
prefrontal cortex
2
Brodmann (1909) area 46
2
H54
2
dorsolateral prefrontal cortex
2
inferior parietal cortex
2
medulloblastoma
2
middle frontal area 46
2
olfactory neurosphere cell line
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
3
blood vessel
3
brain
3
epithelium
3
vasculature
0
nose
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2020
1
September, 2022
Software used
r
1
chromhmm
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
software_used.software.name!
r
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR909RVE
released
Annotation file set
: Chromatin states for BSS00143 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR636KAE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR491SOC
released
Annotation file set
: Accessible chromatin annotation of brain microvascular endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP