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Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
11
gene expression
7
accessible chromatin
4
chromatin state
3
target gene predictions
2
Fine-mapped variants
2
binding sites
2
candidate regulatory elements
2
sQTL
2
variant to gene
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
tissue
1
cell line
Biosample term
4
body of pancreas
4
endocrine pancreas
3
islet of Langerhans
3
pancreas
1
8988T
1
HPDE6-E6E7
1
Panc1
Disease term
1
pancreatic ductal adenocarcinoma
Organ
4
pancreas
Life stage
1
unknown
Date released
2
August, 2017
1
April, 2019
1
September, 2022
Software used
4
chromhmm
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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FileSet
DSR991ZNU
released
Annotation file set
: Chromatin states for BSS01405 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP