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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
1
variant allelic effects
Annotation Category
cis-regulatory elements
4
Target gene links
1
Genetic variant effects
Annotation type Category
4
snATAC-seq
1
ATAC-seq
Available data
5
bed bed3+
5
tsv
2
bigBed narrowPeak
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
6
body of pancreas
6
pancreas
5
pancreatic delta cell
4
endocrine pancreas
4
islet of Langerhans
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
3
pancreatic A cell
3
type B pancreatic cell
2
EndoC_BH1
2
Panc1
2
pancreatic polypeptide-secreting cell
1
8988T
1
HPDE6-E6E7
1
pancreatic endocrine cell
1
pancreatic stellate cell
Organ
5
epithelium
5
pancreas
Life stage
2
adult
Date released
2
January, 2021
1
February, 2024
1
November, 2021
1
September, 2022
Software used
3
cicero
1
abc
1
deltasvm
Lab
4
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
AMP
2
T1D
1
ENCODE
RFA
2
AMP
2
T1D
1
ENCODE3
annotation_category!
cis-regulatory elements
Showing 5 of 5 results
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Download
FileSet
DSR803ULZ
released
Annotation file set
: Target gene predictions of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP