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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
scRNA-seq
Available data
3
bed bed3+
3
bigBed narrowPeak
3
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
22
body of pancreas
17
islet of Langerhans
14
pancreas
12
endocrine pancreas
5
pancreatic alpha cell
5
pancreatic beta cell
4
pancreatic delta cell
3
8988T
3
HPDE6-E6E7
3
pancreatic polypeptide-secreting cell
2
pancreatic acinar cell
2
pancreatic ductal cell
1
activated pancreatic stellate cell
1
pancreatic stellate cell
1
quiescent pancreatic stellate cell
Organ
4
epithelium
4
pancreas
Life stage
4
adult
1
unknown
Date released
2
February, 2024
1
May, 2021
1
September, 2022
Software used
1
cicero
1
deltasvm
1
macs
1
r
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR678BGL
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of pancreatic delta cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR119NFC
released
Annotation file set
: pancreatic delta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP