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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
6
scRNA-seq
6
snATAC-seq
4
ChIP-seq
3
ATAC-seq
3
single cell RNA-seq
2
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
9
EndoC_BH1
6
islet of Langerhans
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
pancreas
2
pancreatic beta cell
1
Panc1
1
body of pancreas
1
pancreatic alpha cell
1
pancreatic delta cell
Organ
3
epithelium
3
pancreas
Life stage
1
child
Date released
1
May, 2021
1
November, 2021
1
October, 2019
Software used
2
abc
1
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
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Download
FileSet
DSR263AKI
released
Annotation file set
: Target gene predictions of Ductal Cell (Pancreatic) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR051SJQ
released
Annotation file set
: enhancer-gene predicton of pancreatic-ductal-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP