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Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
11
gene expression
5
accessible chromatin
3
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
variant to gene
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
8
EndoC_BH1
8
pancreatic beta cell
8
pancreatic ductal cell
7
pancreatic acinar cell
7
pancreatic alpha cell
5
islet of Langerhans
5
pancreas
5
pancreatic delta cell
4
pancreatic stellate cell
2
pancreatic polypeptide-secreting cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
type B pancreatic cell
Organ
5
pancreas
Life stage
3
adult
Date released
May, 2020
1
June, 2020
1
May, 2021
1
November, 2019
1
November, 2021
1
September, 2022
Software used
5
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
month_released!
May, 2020
organ_slims!
adipose tissue
Showing 5 of 5 results
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Download
FileSet
DSR217ZJA
released
Annotation file set
: Accessible chromatin annotation of Fetal Pancreatic Islet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR456JHZ
released
Annotation file set
: Accessible chromatin of ATAC-seq of human islet cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR953RQL
released
Annotation file set
: Accessible chromatin annotation for Pancreas Pancreatic islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935CED
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 43 non-diabetic and T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP