Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
45
islet of Langerhans
25
pancreatic ductal cell
24
body of pancreas
22
pancreas
21
EndoC_BH1
18
pancreatic acinar cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
pancreatic delta cell
15
endocrine pancreas
10
pancreatic stellate cell
6
pancreatic polypeptide-secreting cell
5
Panc1
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
type B pancreatic cell
3
8988T
3
HPDE6-E6E7
3
pancreatic quiescent stellate cell
2
pancreatic endocrine cell
1
activated pancreatic stellate cell
1
pancreatic D cell
1
pancreatic PP cell
1
quiescent pancreatic stellate cell
Organ
4
epithelium
4
pancreas
Date released
2
November, 2021
1
February, 2024
1
May, 2021
Software used
3
abc
1
macs
Lab
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
organ_slims!
vagina
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR243ZIR
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Alpha
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR146SQD
released
Annotation file set
: Target gene predictions of Pancreatic Alpha Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR182RBF
released
Annotation file set
: Target gene predictions of Pancreatic Alpha Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR715HCI
released
Annotation file set
: enhancer-gene predicton of pancreatic-alpha-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP