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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
3
differential activity
3
gene expression
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
3
bigWig
2
bed bed3+
1
bigBed narrowPeak
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
8
EndoC_BH1
6
islet of Langerhans
5
pancreas
5
pancreatic ductal cell
4
pancreatic beta cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic stellate cell
2
pancreatic delta cell
1
NT2-D1 cell
1
ovary
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic polypeptide-secreting cell
1
somatic gonadal cell
1
testis
1
type B pancreatic cell
Organ
3
epithelium
3
pancreas
0
gonad
Life stage
1
adult
Date released
2
February, 2024
1
October, 2019
Software used
3
macs
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
3
ENCODE
1
T1D
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR366MMX
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Acinar
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR294OTS
released
Annotation file set
: pancreatic acinar cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR639GZY
released
Annotation file set
: Pancreatic acinar cell accessible chromatin annotation of overlapping ATAC-seq sites from 4 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP