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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
4
target gene predictions
3
differential activity
3
gene expression
1
variant allelic effects
Annotation Category
4
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
17
small intestine
14
large intestine
7
sigmoid colon
5
body of pancreas
5
pancreas
5
transverse colon
4
colon epithelial cell
4
endocrine pancreas
4
pancreatic delta cell
3
HCT116
3
Peyer's patch
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
HT-29
2
Panc1
2
colonic mucosa
2
duodenal mucosa
2
enteric smooth muscle cell
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
1
8988T
1
EndoC_BH1
1
HCT-116 cell
1
HPDE6-E6E7
1
SW480
1
enterocyte of epithelium of small intestine
1
islet of Langerhans
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
rectum smooth muscle tissue
1
small intestine goblet cell
Organ
4
epithelium
4
pancreas
0
intestine
0
small intestine
Life stage
1
adult
Date released
2
January, 2021
1
November, 2021
1
September, 2022
Software used
3
cicero
1
abc
Lab
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP
1
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR803ULZ
released
Annotation file set
: Target gene predictions of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP