Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
48
accessible chromatin
38
target gene predictions
33
differential activity
33
gene expression
11
eQTL
7
histone modifications
6
chromatin state
5
binding sites
5
variant allelic effects
3
candidate regulatory elements
2
Fine-mapped variants
2
variant to gene
1
sQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
tissue
Biosample term
1
EndoC_BH1
1
body of pancreas
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
Organ
36
epithelium
15
kidney
14
connective tissue
14
vasculature
9
blood vessel
9
brain
9
heart
7
limb
7
musculature of body
5
pancreas
4
artery
3
adipose tissue
3
intestine
3
liver
3
ureter
2
esophagus
2
eye
2
stomach
1
adrenal gland
1
bronchus
1
lung
1
mammary gland
1
nerve
1
prostate gland
1
skin of body
1
thyroid gland
1
vein
0
pituitary gland
Life stage
adult
Date released
3
February, 2024
2
May, 2020
Software used
5
deltasvm
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR869WNA
released
Annotation file set
: Variant allelic effects annotation of Alpha/Beta/Delta cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR515RDR
released
Annotation file set
: Variant allelic effects annotation of Ductal cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR178LRM
released
Annotation file set
: Variant allelic effects annotation of Acinar cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR993IYU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreas body DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP