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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
2
eQTL
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
5
Genetic variant effects
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
6
RNA-seq
1
Capture-C
1
ChIP-seq
Available data
5
tsv
2
bed bed3+
File set status
8
released
Genome assembly (visualization)
6
hg19
5
GRCh38
Organism
8
Homo sapiens
Biosample type
7
tissue
1
in vitro differentiated cells
Biosample term
73
brain
22
caudate nucleus
18
substantia nigra
16
cerebellum
16
frontal cortex
16
layer of hippocampus
15
putamen
14
temporal lobe
12
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
pituitary stalk
9
cingulate gyrus
8
SK-N-MC
8
globus pallidus
8
midbrain
7
BE(2)-C
7
amygdala
7
hypothalamus
7
nucleus accumbens
6
Brodmann (1909) area 46
6
Daoy
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
5
cardiac fibroblast
5
A172
5
M059J
5
brain microvascular endothelial cell
5
cerebellar cortex
4
H54
4
U-87 MG
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
femur
4
inferior parietal cortex
4
medulloblastoma
3
arm bone
3
dorsolateral prefrontal cortex
3
leg bone
3
prefrontal cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
8
brain
0
skeleton
Life stage
5
adult
Date released
3
March, 2020
1
February, 2020
1
February, 2021
1
January, 2020
1
January, 2022
1
September, 2023
Software used
1
chicago
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
macs
1
qTLtools
1
r
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
Showing 8 of 8 results
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Download
FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR130QIU
released
Annotation file set
: brain nucleus accumbens eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR478IXA
released
Annotation file set
: Histone modifications annotation for Neural Nucleus_Accumbens from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR971WFO
released
Annotation file set
: Fine-mapping results from DAPG of nucleus accumbens for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR334UDA
released
Annotation file set
: Fine-mapping results from CAVIAR of nucleus accumbens for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR218WZE
released
Annotation file set
: Fine-mapping results from CaVEMaN of nucleus accumbens for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR122AFN
released
Annotation file set
: eQTL of nucleus accumbens for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR348MAL
released
Annotation file set
: Gene expression summary of TPM of brain nucleus accumbens from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP