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Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
4
binding sites
3
candidate regulatory elements
3
chromatin state
3
histone modifications
2
accessible chromatin
1
variant allelic effects
Annotation Category
5
Target gene links
3
cis-regulatory elements
Annotation type Category
5
ChIP-seq
3
ATAC-seq
3
DNase-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
8
foreskin keratinocyte
8
keratinocyte
7
fibroblast of dermis
5
foreskin fibroblast
5
skin fibroblast
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
lower leg skin
3
iPS DF 19.11
2
COLO829
2
GM23248
2
RPMI7951
2
SK-MEL-5
2
epidermal melanocyte
2
iPS DF 19.7
2
iPS DF 4.7 Cell Line
2
iPS DF 6.9
2
iPS-11a
2
iPS-15b
2
iPS-18a
2
iPS-18c
2
iPS-20b
2
skin of body
1
basal cell of epidermis
1
fibroblast of arm
1
granular cell of epidermis
Organ
8
epithelium
8
skin of body
Life stage
4
unknown
Date released
4
September, 2022
2
November, 2021
1
August, 2017
1
May, 2021
Software used
3
abc
3
chromhmm
2
r
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
6
AMP
2
ENCODE
RFA
6
AMP
2
ENCODE3
biosample_term_name!
lower leg skin
Showing 8 of 8 results
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Download
FileSet
DSR125EUW
released
Annotation file set
: Target gene predictions for BSS01071 keratinocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR555IYR
released
Annotation file set
: Target gene predictions for BSS01068 keratinocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550OVN
released
Annotation file set
: Chromatin states for BSS01071 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR081LIX
released
Annotation file set
: Chromatin states for BSS01068 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR681TKD
released
Annotation file set
: Target gene predictions of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR385FIQ
released
Annotation file set
: Target gene predictions of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR926EGV
released
Annotation file set
: enhancer-gene predicton of keratinocyte-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR926942
released
Annotation file set
: ChromHMM 13-state model for NHEK
Lab:
Stephen Parker, UMich
Project:
AMP