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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
41
K562
22
foreskin keratinocyte
21
keratinocyte
19
foreskin fibroblast
16
GM12878
12
fibroblast of dermis
12
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
9
foreskin melanocyte
8
GM06990
8
GM19240
8
HAP-1
8
HL-60
8
NAMALWA cell
8
OCI-LY7
8
dermis lymphatic vessel endothelial cell
7
CMK
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
RPMI8226
6
GM12891
6
GM12892
6
KBM-7
6
iPS DF 4.7 Cell Line
6
peripheral blood mononuclear cell
6
skin of body
5
NB4
5
RPMI7951
5
SK-MEL-5
5
iPS DF 19.11
4
EH
4
EL
4
ELR
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
GM10847
3
GM12872
3
GM18526
3
GM18951
3
epidermal melanocyte
3
peripheral blood stem cell
3
suprapubic skin
2
NAMALWA
2
basal cell of epidermis
2
blood
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
GM12874
1
HGPS cell
1
Karpas-422
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
whole blood
Organ
8
blood
8
bodily fluid
0
penis
0
skin of body
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR834AMF
released
Annotation file set
: Candidate regulatory elements for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR765USM
released
Annotation file set
: Target gene predictions for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296VLY
released
Annotation file set
: Chromatin states for BSS00491 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930MDC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HAP-1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956RSG
released
Annotation file set
: Histone modifications annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497ETD
released
Annotation file set
: Binding sites annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR155AOX
released
Annotation file set
: enhancer-gene predicton of HAP1 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR934MXE
released
Annotation file set
: Accessible chromatin annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP