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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
67
muscle of arm
58
muscle of leg
25
tibial nerve
22
foreskin keratinocyte
21
keratinocyte
19
foreskin fibroblast
19
tibial artery
18
gastrocnemius medialis
12
fibroblast of dermis
12
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
8
dermis lymphatic vessel endothelial cell
8
limb
7
GM23248
6
iPS DF 4.7 Cell Line
6
skin of body
5
RPMI7951
5
SK-MEL-5
5
gastrocnemius medialis(Muscle - Skeletal)
5
iPS DF 19.11
4
dermis microvascular lymphatic vessel endothelial cell
4
femur
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
arm bone
3
epidermal melanocyte
3
leg bone
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
basal cell of epidermis
2
forelimb muscle
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
HGPS cell
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
hindlimb muscle
1
iPS DF 4.7
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
Organ
5
skin of body
0
limb
Life stage
3
newborn
1
postnatal
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
organ_slims!
lung
Showing 5 of 5 results
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Download
FileSet
DSR895SKI
released
Annotation file set
: Candidate regulatory elements for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985UCV
released
Annotation file set
: Target gene predictions for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR241URV
released
Annotation file set
: Chromatin states for BSS00731 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR584ZJC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE iPS DF 19.11
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR544HLF
released
Annotation file set
: enhancer-gene predicton of iPS_DF_19.11_Cell_Line-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP