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Citing CMDGA
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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
2
hepatocyte
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
Organ
2
epithelium
2
liver
0
small intestine
Date released
1
February, 2024
1
May, 2020
Software used
13
macs
12
r
5
salmon
2
abc
2
chromhmm
2
deltasvm
1
encode-ccres
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR488RFU
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver hepatocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP