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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
2
gene expression
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
6
endothelial cell of hepatic sinusoid
3
coronary artery
3
tibial artery
2
aortic endothelial cell
2
capillary endothelial cell
2
endothelial cell of umbilical vein
2
spinal cord
1
ascending aorta
1
brain microvascular endothelial cell
1
fibroblast of pulmonary artery
1
kidney capillary endothelial cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
smooth muscle cell of the coronary artery
1
thoracic aorta
Organ
3
blood vessel
3
vasculature
2
epithelium
1
artery
1
heart
0
spinal cord
Life stage
1
unknown
Date released
2
April, 2020
1
February, 2021
Software used
1
macs
Lab
2
Xin Sun, UCSD
1
AMP-T2D consortium
Project
2
LungMap
1
AMP
RFA
2
LungMap2
1
AMP
Showing 3 of 3 results
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Download
FileSet
DSR294KMW
released
Annotation file set
: ATAC-seq peaks in capillary 1 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR864HPI
released
Annotation file set
: ATAC-seq peaks in capillary 2 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP