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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
1
tsv
File set status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
cell line
3
primary cell
Biosample term
27
spinal cord
18
coronary artery
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
tibial artery
13
ascending aorta
9
aorta
8
dermis blood vessel endothelial cell
8
thoracic aorta
7
fibroblast of pulmonary artery
7
smooth muscle cell of the coronary artery
6
pulmonary artery endothelial cell
5
Afferent / Efferent Arteriole Endothelial Cell
5
C1 segment of cervical spinal cord
5
Degenerative Peritubular Capillary Endothelial Cell
5
Glomerular Capillary Endothelial Cell
5
Peritubular Capillary Endothelial Cell
4
aortic endothelial cell
4
brain microvascular endothelial cell
4
fibroblast of the aortic adventitia
4
kidney capillary endothelial cell
4
pancreatic endothelial cell
3
astrocyte of the spinal cord
2
capillary endothelial cell
2
endothelial cell of coronary artery
2
vein endothelial cell
1
brain microvascular endothelial cell
1
abdominal aorta artery
1
aorta wall
1
aortic smooth muscle cell
1
circle of Willis
1
placental villus capillary endothelial cell
1
whole blood
Organ
7
artery
7
blood vessel
7
heart
7
vasculature
0
spinal cord
Life stage
2
adult
1
unknown
Date released
4
February, 2021
1
February, 2020
1
February, 2023
1
May, 2021
Software used
3
macs
2
r
1
abc
1
rasqual
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
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Showing 7 of 7 results
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FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP