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Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
13
skeletal muscle satellite cell
9
skeletal muscle fiber
7
LHCN-M2
7
type I muscle cell
7
type II muscle cell
6
skeletal muscle cell
5
A673
5
SJCRH30
5
myotube
2
cardiac muscle myoblast
2
somatic muscle myotube
1
aortic smooth muscle cell
Organ
7
musculature of body
0
spleen
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
2
ENCODE
RFA
4
AMP2
2
ENCODE3
1
AMP
biosample_type!
tissue
Showing 7 of 7 results
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Download
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR940UYQ
released
Annotation file set
: Accessible chromatin annotation of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP