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Schema
Citing CMDGA
Clear Filters
Annotation type
5
histone modifications
3
binding sites
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
61
stomach
23
liver
7
hepatocyte
6
gastroesophageal sphincter
6
stomach smooth muscle
5
HepG2
3
mucosa of stomach
3
right lobe of liver
2
HuH-7
2
HuH-7.5
2
hepatic stellate cell
1
foveolar cell of stomach
1
gastric (mucosa of stomach)
1
parietal cell
1
peptic cell
1
stomach neuroendocrine cell
Disease term
2
hepatocellular carcinoma
Organ
5
liver
0
stomach
Life stage
2
child
1
young adult
Date released
2
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chicago
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR473QIA
released
Annotation file set
: Candidate regulatory elements for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR306YJJ
released
Annotation file set
: Target gene predictions for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707QFW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HepG2
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP