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Schema
Citing CMDGA
Clear Filters
Annotation type
7
candidate regulatory elements
3
binding sites
3
chromatin state
3
target gene predictions
2
accessible chromatin
2
eQTL
1
gene expression
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed9
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
cell line
Biosample term
4
testis
1
NT2-D1 cell
Organ
234
epithelium
123
kidney
116
connective tissue
108
brain
96
musculature of body
80
lung
79
intestine
77
pancreas
75
heart
70
limb
65
eye
56
vasculature
47
blood vessel
45
large intestine
41
skin of body
40
embryo
40
liver
39
extraembryonic component
36
bodily fluid
34
blood
32
stomach
27
bone element
23
small intestine
21
adrenal gland
20
mammary gland
19
placenta
17
adipose tissue
17
ureter
14
artery
14
prostate gland
13
lymph node
13
penis
13
thymus
12
gonad
11
skeleton
10
esophagus
9
spinal cord
8
spleen
7
nerve
7
uterus
7
vein
6
lymphoid tissue
6
ovary
6
thyroid gland
5
testis
4
lymphatic vessel
4
mouth
3
bone marrow
3
breast
3
bronchus
3
tongue
3
urinary bladder
2
nose
2
vagina
1
trachea
Life stage
2
adult
1
embryonic
unknown
Date released
3
September, 2022
2
June, 2020
Software used
3
chromhmm
2
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
relevant_life_stage!
unknown
Showing 5 of 5 results
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FileSet
DSR845ZVQ
released
Annotation file set
: Chromatin states for BSS01719 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR211VUO
released
Annotation file set
: Chromatin states for BSS01718 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR666MOR
released
Annotation file set
: Chromatin states for BSS01715 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZSB
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924JBA
released
Annotation file set
: Accessible chromatin annotation for Gonad Testis from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP