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Schema
Citing CMDGA
Clear Filters
Annotation type
13
candidate regulatory elements
7
target gene predictions
6
chromatin state
5
accessible chromatin
5
binding sites
2
eQTL
2
histone modifications
1
gene expression
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
snATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
tissue
Biosample term
2
club cell
1
NT2-D1 cell
1
bronchial epithelial cell
1
testis
Organ
212
epithelium
88
connective tissue
pancreas
59
eye
50
kidney
42
brain
36
vasculature
27
musculature of body
26
blood vessel
26
heart
24
liver
21
intestine
20
limb
15
bone element
15
lung
13
skin of body
12
blood
12
bodily fluid
12
embryo
11
artery
10
large intestine
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adipose tissue
7
adrenal gland
7
mammary gland
5
gonad
5
prostate gland
4
esophagus
4
lymphatic vessel
4
placenta
4
ureter
3
bronchus
3
nerve
3
penis
3
small intestine
3
uterus
2
bone marrow
2
lymphoid tissue
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
2
thyroid gland
2
vein
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
Date released
3
June, 2020
1
April, 2020
1
November, 2021
Software used
4
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
AMP
1
ENCODE
1
LungMap
RFA
3
AMP
1
ENCODE3
1
LungMap2
organ_slims!
pancreas
Showing 5 of 5 results
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Download
FileSet
DSR848VTY
released
Annotation file set
: ATAC-seq peaks in club cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR678WWH
released
Annotation file set
: Accessible chromatin annotation of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR815ZSB
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR613FQC
released
Annotation file set
: Accessible chromatin annotation for Lung Bronchial epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924JBA
released
Annotation file set
: Accessible chromatin annotation for Gonad Testis from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP