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Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
68
lung
62
A549
52
left lung
45
right lung
19
thyroid gland
16
fibroblast of lung
16
upper lobe of left lung
9
IMR-90
8
PC-9
7
WI38
7
type II pneumocyte
5
lung microvascular endothelial cell
4
NCI-H226 cell
4
NCI-H460 cell
4
type I pneumocyte
3
thyroid follicular cell
1
NCI-H226
1
NCI-H460
1
endothelial cell of artery
1
lung neuroendocrine cell
1
thyroid
Organ
3
epithelium
3
thyroid gland
0
lung
Date released
2
November, 2021
1
February, 2024
Software used
1
abc
1
deltasvm
1
macs
Lab
3
Bing Ren, UCSD
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
Showing 3 of 3 results
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Download
FileSet
DSR121IWB
released
Annotation file set
: Target gene predictions of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356XOM
released
Annotation file set
: Accessible chromatin annotation of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR447YDG
released
Annotation file set
: Variant allelic effects annotation of Follicular cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP