Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
22
foreskin keratinocyte
21
keratinocyte
19
foreskin fibroblast
12
fibroblast of dermis
12
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
10
vagina
8
dermis lymphatic vessel endothelial cell
7
GM23248
6
iPS DF 4.7 Cell Line
6
skin of body
5
RPMI7951
5
SK-MEL-5
5
iPS DF 19.11
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
epidermal melanocyte
3
suprapubic skin
2
basal cell of epidermis
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
HGPS cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
Disease term
3
melanoma
Organ
5
skin of body
0
vagina
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR319EDV
released
Annotation file set
: Candidate regulatory elements for BSS01536 RPMI7951 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR395YGG
released
Annotation file set
: Target gene predictions for BSS01536 RPMI7951 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR011XDK
released
Annotation file set
: Chromatin states for BSS01536 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991XXY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RPMI7951
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR752EOW
released
Annotation file set
: Accessible chromatin annotation for Epidermis RPMI-7951 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP