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Schema
Citing CMDGA
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Annotation type
3
Fine-mapped variants
3
accessible chromatin
3
candidate regulatory elements
3
chromatin state
2
eQTL
2
target gene predictions
2
variant allelic effects
1
gene expression
Annotation Category
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
4
endothelial cell of hepatic sinusoid
4
vascular associated smooth muscle cell
3
Afferent / Efferent Arteriole Endothelial Cell
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Glomerular Capillary Endothelial Cell
3
Lymphatic Endothelial Cell
3
Peritubular Capillary Endothelial Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
coronary artery
3
tibial artery
2
cardiac fibroblast
2
ascending aorta
2
smooth muscle cell of the coronary artery
1
brain microvascular endothelial cell
1
aorta
1
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
pancreatic endothelial cell
1
smooth muscle cell of the brain vasculature
1
thoracic aorta
1
whole blood
Organ
3
artery
3
blood vessel
3
limb
3
vasculature
Life stage
1
adult
Date released
2
May, 2020
1
January, 2020
Software used
2
deltasvm
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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FileSet
DSR238UZR
released
Annotation file set
: Genetic variants with deltaSVM predictions in tibial artery ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR283WPA
released
Annotation file set
: Genetic variants with deltaSVM predictions in artery tibial DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976UYN
released
Annotation file set
: Gene expression summary of TPM of artery tibial from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP