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Schema
Citing CMDGA
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Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
6
endothelial cell of hepatic sinusoid
4
coronary artery
3
cardiac fibroblast
3
endothelial cell of lymphatic vessel
3
tibial artery
2
aortic endothelial cell
2
capillary endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
smooth muscle cell of the coronary artery
1
ascending aorta
1
brain microvascular endothelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
smooth muscle cell of the brain vasculature
1
thoracic aorta
Organ
2
artery
2
blood vessel
2
heart
2
vasculature
Life stage
1
unknown
Date released
1
February, 2021
1
February, 2023
Software used
1
macs
1
rasqual
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
kidney
Showing 2 of 2 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP