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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
accessible chromatin
3
candidate regulatory elements
3
chromatin state
2
eQTL
2
target gene predictions
2
variant allelic effects
1
gene expression
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
18
epithelial cell of proximal tubule
16
glomerular endothelial cell
16
hepatocyte
11
foreskin keratinocyte
10
endothelial cell
8
EndoC_BH1
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
pancreatic ductal cell
5
aorta
5
ascending aorta
5
breast epithelium
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
bronchial epithelial cell
4
coronary artery
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney tubule cell
4
myoepithelial cell of mammary gland
4
thoracic aorta
4
tibial artery
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Connecting Tubule Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
Medullary Thick Ascending Limb Cell
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
S-shaped body
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
hepatocyte(AFP)
3
keratinocyte
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
lung microvascular endothelial cell
3
mammary epithelial cell
3
mammary gland epithelial cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
renal cortical epithelial cell
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
epithelial cell of esophagus
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
iris pigment epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
non-pigmented ciliary epithelial cell
2
pancreatic polypeptide-secreting cell
2
pulmonary artery endothelial cell
2
renal vesicle
2
retinal pigment epithelial cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the coronary artery
2
vascular associated smooth muscle cell
1
amniotic epithelial cell
1
breast - mammary tissue
1
cholangiocyte
1
colon epithelial cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
intermediate endothelial cell
1
kidney capillary endothelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of mammary gland
1
meso-epithelial cell
1
pancreatic alpha+beta cell
1
pancreatic cycling alpha cell
1
pancreatic endothelial cell
1
pancreatic gamma+epsilon cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
ureteric bud
1
whole blood
Organ
4
artery
4
blood vessel
4
limb
4
vasculature
0
epithelium
Life stage
4
adult
Date released
2
September, 2022
1
February, 2021
1
January, 2020
Software used
3
r
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR834BNE
released
Annotation file set
: Candidate regulatory elements for BSS01838 tibial artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR244ZUY
released
Annotation file set
: Candidate regulatory elements for BSS01837 tibial artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR241WGS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE tibial artery
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976UYN
released
Annotation file set
: Gene expression summary of TPM of artery tibial from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP