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Annotation type
3
target gene predictions
Annotation Category
3
Target gene links
Annotation type Category
3
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
tissue
Biosample term
1
cardiomyocytes (cardiac muscle cell)
1
islet of Langerhans
1
lymphocyte of B lineage (iPSC)
Organ
1
pancreas
Life stage
3
adult
Date released
1
January, 2020
1
March, 2020
1
May, 2020
Software used
1136
r
385
chromhmm
316
encode-ccres
233
macs
115
deseq2
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
19
deltasvm
15
limix
9
salmon
8
hiccups
7
fastqtl
7
matrix-eQTL
5
peer
4
cicero
3
chicago
3
mach2qtl
3
minfi
3
sqtlseeker
3
unknown
2
emmax
2
qTLtools
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR854NSN
released
Annotation file set
: A target gene prediction annotation in cardiomyocytes (cardiac muscle cell) of DSR382TEU pCHi-C E-MTAB-6014
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991ZOB
released
Annotation file set
: A target gene prediction annotation in lymphocyte of B lineage (iPSC) of DSR535XNG pCHi-C E-MTAB-6014
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299XDW
released
Annotation file set
: Target gene prediction annotation derived from chromatin loops in islet pcHi-C
Lab:
AMP-T2D consortium
Project:
AMP