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Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
1
variant allelic effects
Annotation Category
5
Target gene links
1
Genetic variant effects
Annotation type Category
5248
ChIP-seq
3000
DNase-seq
549
RNA-seq
487
ATAC-seq
353
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
17
Expression arrays
12
snRNA-seq
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
3
quantitative proteomics
1
SNP-SELEX
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
purified protein and synthetic DNA oligo binding assay
1
undifferentiated ESC (H9 cell line)
Organ
3
brain
2
connective tissue
Date released
5
September, 2023
1
February, 2023
Software used
5
chicago
1
betacells_cytokines_t1d
Lab
5
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Project
5
AMP
1
T1D
RFA
5
AMP2
1
T1D
software_used.software.name!
deltasvm
Showing 6 of 6 results
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FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR416XCR
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Neuron (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR841JDM
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Osteoblasts (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR722BWL
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Adipocytes (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D